datahipy/bids/dataset.py

@@ -4,6 +4,7 @@
 """Utility functions to retrieve BIDS dataset content to be indexed by the Elasticsearch engine of the HIP."""
 
 import os
+import shutil
 import json
 import subprocess
 from concurrent.futures import ProcessPoolExecutor
@@ -324,6 +325,10 @@ def dataset_publish(input_data, output_file):
     # Extract the source and target dataset paths
     source_dataset_path = input_content["sourceDatasetPath"]
     target_dataset_path = input_content["targetDatasetPath"]
+    # Remove target sibling if it does exist
+    if os.path.isdir(target_dataset_path):
+        print(f"WARNING: Remove existing target sibling dataset ({target_dataset_path})")
+        shutil.rmtree(target_dataset_path)
     # Create datalad dataset sibling to publish to
     datalad.api.create_sibling(
         name="public",

datahipy/info.py

@@ -6,7 +6,7 @@
 import datetime
 
 
-__version__ = "1.3.0-dev.2"
+__version__ = "1.3.0-dev.3"
 
 __current_year__ = datetime.datetime.now().strftime("%Y")
 

docs/CHANGES.md

+# [1.3.0-dev.3](https://gitlab.hbp.link/hip/datahipy/compare/v1.3.0-dev.2...v1.3.0-dev.3) (2023-10-31)
+
+
+### Bug Fixes
+
+* **bids/dataset.py:** remove target sibling if it exists during create_sibling ([385f72b](https://gitlab.hbp.link/hip/datahipy/commit/385f72bb28249dbab57e39062e697d30fe1cd8a2))
+
 # [1.3.0-dev.2](https://gitlab.hbp.link/hip/datahipy/compare/v1.3.0-dev.1...v1.3.0-dev.2) (2023-10-31)