Commit 355ce0cc authored by Sebastien Tourbier's avatar Sebastien Tourbier
Browse files

fix: use absolute path when creating nested datalad dataset

parent 70fb6174

datahipy/bids/dataset.py

+2 −3
Original line number Diff line number Diff line
@@ -97,7 +97,6 @@ def create_empty_bids_dataset(bids_dir=None, dataset_desc=None, project_dir=None 
        Path to the project directory in which the BIDS dataset will be nested.

    """

    print("> Creating an empty BIDS dataset at: ", bids_dir, "...")

    bids_dirname = os.path.basename(bids_dir)

    # Create the BIDS dataset directory if it does not exist

    if not os.path.exists(os.path.dirname(bids_dir)):

        os.makedirs(bids_dir, exist_ok=True)
@@ -110,7 +109,7 @@ def create_empty_bids_dataset(bids_dir=None, dataset_desc=None, project_dir=None 
    # of the project dataset

    if project_dir:

        create_params["dataset"] = project_dir

        create_params["path"] = bids_dirname

        create_params["path"] = bids_dir

    # Otherwise, create a standalone dataset

    else:

        create_params["dataset"] = bids_dir
@@ -134,7 +133,7 @@ def create_empty_bids_dataset(bids_dir=None, dataset_desc=None, project_dir=None 
    }

    if project_dir:

        save_params["dataset"] = project_dir

        save_params["path"] = bids_dirname

        save_params["path"] = bids_dir

    else:

        save_params["dataset"] = bids_dir

    datalad.api.save(**save_params)

datahipy/handlers/project.py

+1 −1
Original line number Diff line number Diff line
@@ -117,7 +117,7 @@ def create_project(input_data: str, output_file: str): 
    save_params = {

        "dataset": str(project_dir.absolute()),

        "message": "Initial dataset state of collaborative project",

        "recursive": True,  # Do not save the nested Datalad-BIDS dataset

        "recursive": True,  # Do save the nested Datalad-BIDS dataset

    }

    datalad.api.save(**save_params)

    print(SUCCESS)