Loading datahipy/bids/dataset.py +17 −3 Original line number Diff line number Diff line Loading @@ -13,6 +13,8 @@ from datetime import date from bids import BIDSLayout import datalad.api from datahipy.bids.electrophy import get_ieeg_info from datahipy.bids.participant import get_participants_info from datahipy.bids.validation import ( Loading Loading @@ -92,8 +94,14 @@ def create_empty_bids_dataset(bids_dir=None, dataset_desc=None): Dictionary with the content of the dataset_description.json file. """ print("> Creating an empty BIDS dataset at: ", bids_dir, "...") # Create the BIDS dataset directory # Create the BIDS dataset directory if it does not exist if not os.path.exists(os.path.dirname(bids_dir)): os.makedirs(bids_dir, exist_ok=True) # Initialize the BIDS dataset as a Datalad-managed dataset datalad.api.create( dataset=bids_dir, cfg_proc=['text2git', 'bids'] ) # Create the dataset_description.json file with open(os.path.join(bids_dir, "dataset_description.json"), "w") as f: json.dump(dataset_desc, f, indent=4) Loading @@ -106,6 +114,12 @@ def create_empty_bids_dataset(bids_dir=None, dataset_desc=None): add_bidsignore_validation_rule(bids_dir, "**/*_ct.*") # Create an initial participants.tsv file create_initial_participants_tsv(bids_dir) # Save the state of the initial dataset datalad.api.save( dataset=bids_dir, message='Initial blank BIDS dataset', recursive=True ) def create_bids_layout(bids_dir=None, **kwargs): Loading Loading
datahipy/bids/dataset.py +17 −3 Original line number Diff line number Diff line Loading @@ -13,6 +13,8 @@ from datetime import date from bids import BIDSLayout import datalad.api from datahipy.bids.electrophy import get_ieeg_info from datahipy.bids.participant import get_participants_info from datahipy.bids.validation import ( Loading Loading @@ -92,8 +94,14 @@ def create_empty_bids_dataset(bids_dir=None, dataset_desc=None): Dictionary with the content of the dataset_description.json file. """ print("> Creating an empty BIDS dataset at: ", bids_dir, "...") # Create the BIDS dataset directory # Create the BIDS dataset directory if it does not exist if not os.path.exists(os.path.dirname(bids_dir)): os.makedirs(bids_dir, exist_ok=True) # Initialize the BIDS dataset as a Datalad-managed dataset datalad.api.create( dataset=bids_dir, cfg_proc=['text2git', 'bids'] ) # Create the dataset_description.json file with open(os.path.join(bids_dir, "dataset_description.json"), "w") as f: json.dump(dataset_desc, f, indent=4) Loading @@ -106,6 +114,12 @@ def create_empty_bids_dataset(bids_dir=None, dataset_desc=None): add_bidsignore_validation_rule(bids_dir, "**/*_ct.*") # Create an initial participants.tsv file create_initial_participants_tsv(bids_dir) # Save the state of the initial dataset datalad.api.save( dataset=bids_dir, message='Initial blank BIDS dataset', recursive=True ) def create_bids_layout(bids_dir=None, **kwargs): Loading